Marcel Koek MSc.

Marcel Koek

Office: Na-2502
Phone: +31-10-7044883

Curriculum Vitae

Marcel Koek is a Research Software Engineer and Team Leader of the IT Infrastructure Group.

Research lines

Neuro Image Analysis


Extraction of Neuro Imaging Biomarkers from Clinical MR Data and its Applications


Google Scholar profile

Journal Articles

  1. van Vugt, J. L. A., van den Braak, R. R. J. C., Schippers, H. J. W., Veen, K. M., Levolger, S., de Bruin, R. W. F., … Willemsen, F. E. J. A. (2018). Contrast-enhancement influences skeletal muscle density, but not skeletal muscle mass, measurements on computed tomography. Clinical Nutrition, 37(5), 1707–1714.
  2. Vernooij, M. W., Jasperse, B., Steketee, R., Koek, M., Vrooman, H., Ikram, M. A., … Niessen, W. J. (2018). Automatic normative quantification of brain tissue volume to support the diagnosis of dementia: A clinical evaluation of diagnostic accuracy. NeuroImage: Clinical, 20, 374–379.
  3. van Vugt, J. L. A., Levolger, S., Gharbharan, A., Koek, M., Niessen, W. J., Burger, J. W. A., … IJzermans, J. N. M. (2017). A comparative study of software programmes for cross-sectional skeletal muscle and adipose tissue measurements on abdominal computed tomography scans of rectal cancer patients. Journal of Cachexia, Sarcopenia and Muscle, 8(2), 285–297.
  4. Steketee, R., Vernooij, M. W., Jasperse, B., Koek, M., Vrooman, H. A., Ikram, M. A., … others. (2017). AUTOMATIC QUANTIFICATION OF BRAIN MRI TO IMPROVE THE DIAGNOSTIC WORKUP OF DEMENTIA IN MEMORY CLINIC PATIENTS. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association, 13(7), P1119–P1120.
  5. Van Vugt, J., van den Braak, R. C., Schippers, H.-J., Veen, K., Levolger, S., de Bruin, R., … Willemssen, F. (2017). SUN-P201: Contrast-Enhancement Influences Skeletal Muscle Density, but Not Skeletal Muscle Mass, Measurements on Computed Tomography. Clinical Nutrition, 36, S128.
  6. Grotenhuis, B. A., Shapiro, J., van Adrichem, S., de Vries, M., Koek, M., Wijnhoven, B. P. L., & van Lanschot, J. J. B. (2016). Sarcopenia/muscle mass is not a prognostic factor for short-and long-term outcome after esophagectomy for cancer. World Journal of Surgery, 40(11), 2698–2704.
  7. Achterberg, H. C., Koek, M., & Niessen, W. J. (2016). Fastr: A workflow engine for advanced data flows in medical image analysis. Frontiers in ICT, 3, 15.
  8. Riba-Llena, I., Koek, M., Verhaaren, B. F. J., Vrooman, H. A., van der Lugt, A., Hofman, A., … Vernooij, M. W. (2015). Small cortical infarcts: prevalence, determinants, and cognitive correlates in the general population. International Journal of Stroke, 10, 18–24.
  9. Levolger, S., van Vledder, M. G., Muslem, R., Koek, M., Niessen, W. J., de Man, R. A., … Ijzermans, J. N. M. (2015). Sarcopenia impairs survival in patients with potentially curable hepatocellular carcinoma. Journal of Surgical Oncology, 112(2), 208–213.
  10. Massl, R., van Blankenstein, M., Jeurnink, S., Hermans, J. J., de Haan, M. C., Stoker, J., … others. (2014). Visceral adipose tissue: the link with esophageal adenocarcinoma. Scandinavian Journal of Gastroenterology, 49(4), 449–457.
  11. Lafranca, J. A., Prens, L. M., van Bruggen, M., Moelker, A., Koek, M., Niessen, W. J., … Dor, F. J. M. F. (2014). Perirenal and Intra-Abdominal Fat Mass Superior over BMI in Predicting Donor Outcome in Laparoscopic Donor Nephrectomy. SHIFTING PARADIGMS IN LIVE KIDNEY DONATION AND TRANSPLANTATION, 107.
  12. Bakker, R., Koek, M., Ranguelova, E., De Boer, P. T., Meulenbroek, O., Burgmans, S., … others. (2014). eScience Infrastructure for running validated image analysis pipelines: how to best compare MRI scans from different medical centers.
  13. Gonçalves, F. B., Koek, M., Verhagen, H. J. M., Niessen, W. J., & Poldermans, D. (2011). Body-mass index, abdominal adiposity, and cardiovascular risk. The Lancet, 378(9787), 227.
  14. Massl, R., Jeurnink, S., Hermans, J. J., de Haan, M. C., Stoker, J., Koek, M., … Kuipers, E. J. (2011). No Significant Differences in Abdominal Fat Distribution Between Patients With Esophageal Adenocarcinoma, Esophageal Squamous Cell Carcinoma and Healthy Population Controls. Gastroenterology, 140(5), S–672.
  15. Mook-Kanamori, D. O., Holzhauer, S., Hollestein, L. M., Durmus, B., Manniesing, R., Koek, M., … others. (2009). Abdominal fat in children measured by ultrasound and computed tomography. Ultrasound in Medicine & Biology, 35(12), 1938–1946.

Conference Articles

  1. Klein, S., Vast, E., Van Soest, J., Dekker, A., Koek, M., & Niessen, W. (2015). XNAT imaging platform for BioMedBridges and CTMM TraIT. In Journal of clinical bioinformatics (Vol. 5, p. S18). BioMed Central.
  2. Koek, M., Achterberg, H., de Groot, M., Vast, E., Klein, S., & Niessen, W. (2015). Population Imaging Study IT Infrastructure: An Automated Continuous Workflow Approach. In 1 st MICCAI Workshop on (p. 31).
  3. Achterberg, H., Koek, M., & Niessen, W. (2015). Fastr: a workflow engine for advanced data flows. In 1st MICCAI Workshop on Management and Processing of Images for Population Imaging (Munich) (pp. 39–46).
  4. De Boer, P., Ranguelova, E., Ivanova, M., Koek, M., Van Der Lijn, F., Niessen, W., … others. (2013). eScience Infrastructure for sharing neuroimaging data and running validated analysis pipelines on a high performance cloud. In Front. Neuroinform. Conference Abstract: Neuroinformatics.
  5. Niessen, W., Vrooman, H., de Boer, R., van der Lijn, F., Achterberg, H., Koek, M., … others. (2012). Quantitative imaging biomarkers in neurologic disease: Population study perspective. In 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI) (pp. 911–911). IEEE.
  6. Koek, M., Goncalves, F. B., Poldermans, D., Niessen, W., & Manniesing, R. (2011). Semi–automated subcutaneous and visceral adipose tissue quantification in computed tomography. In International MICCAI Workshop on Computational and Clinical Challenges in Abdominal Imaging (pp. 215–222). Springer, Berlin, Heidelberg.
  7. Vrooman, H. A., Jasperse, M. M. S., Koek, M., van der Lijn, F., Achterberg, H. C., de Bruijne, M., … Niessen, W. J. (2011). A computer-aided diagnosis system for the early and differential diagnosis of neurodegenerative disease. In European Congress of Radiology.
  8. Goncalves, F. B., Koek, M., Ravensbergen, N., Voute, M., Verhagen, H., Niessen, W., & Poldermans, D. (2011). Automated visceral and subcutaneous abdominal fat volume measurement: a validation study. In AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (Vol. 183, pp. 703–703). AMER THORACIC SOC 61 BROADWAY, FL 4, NEW YORK, NY 10006 USA.
  9. Van Kuijk, J. P., Manniesing, R., Goei, D., Van Gestel, Y. R. B. M., Hoeks, S. E., Koek, M., … Poldermans, D. (2010). Automatic quantification of the abdominal visceral fat content: a true marker of the metabolic syndrome? In EUROPEAN HEART JOURNAL (Vol. 31, pp. 1009–1009). OXFORD UNIV PRESS GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND.