Marcel Koek MSc.
Office: Na-2502
Phone: +31-10-7044883
Email: m.koek@erasmusmc.nl
Website: http://nl.linkedin.com/in/marcelkoek
Curriculum Vitae
Marcel Koek is a Research Software Engineer and Team Leader of the IT Infrastructure Group.
Research lines
Projects
Extraction of Neuro Imaging Biomarkers from Clinical MR Data and its Applications
Publications
Journal Articles
- van Vugt, J. L. A., van den Braak, R. R. J. C., Schippers, H. J. W., Veen, K. M., Levolger, S., de Bruin, R. W. F., … Willemsen, F. E. J. A. (2018). Contrast-enhancement influences skeletal muscle density, but not skeletal muscle mass, measurements on computed tomography. Clinical Nutrition, 37(5), 1707–1714.
- Vernooij, M. W., Jasperse, B., Steketee, R., Koek, M., Vrooman, H., Ikram, M. A., … Niessen, W. J. (2018). Automatic normative quantification of brain tissue volume to support the diagnosis of dementia: A clinical evaluation of diagnostic accuracy. NeuroImage: Clinical, 20, 374–379.
- van Vugt, J. L. A., Levolger, S., Gharbharan, A., Koek, M., Niessen, W. J., Burger, J. W. A., … IJzermans, J. N. M. (2017). A comparative study of software programmes for cross-sectional skeletal muscle and adipose tissue measurements on abdominal computed tomography scans of rectal cancer patients. Journal of Cachexia, Sarcopenia and Muscle, 8(2), 285–297.
- Steketee, R., Vernooij, M. W., Jasperse, B., Koek, M., Vrooman, H. A., Ikram, M. A., … others. (2017). AUTOMATIC QUANTIFICATION OF BRAIN MRI TO IMPROVE THE DIAGNOSTIC WORKUP OF DEMENTIA IN MEMORY CLINIC PATIENTS. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association, 13(7), P1119–P1120.
- Van Vugt, J., van den Braak, R. C., Schippers, H.-J., Veen, K., Levolger, S., de Bruin, R., … Willemssen, F. (2017). SUN-P201: Contrast-Enhancement Influences Skeletal Muscle Density, but Not Skeletal Muscle Mass, Measurements on Computed Tomography. Clinical Nutrition, 36, S128.
- Grotenhuis, B. A., Shapiro, J., van Adrichem, S., de Vries, M., Koek, M., Wijnhoven, B. P. L., & van Lanschot, J. J. B. (2016). Sarcopenia/muscle mass is not a prognostic factor for short-and long-term outcome after esophagectomy for cancer. World Journal of Surgery, 40(11), 2698–2704.
- Achterberg, H. C., Koek, M., & Niessen, W. J. (2016). Fastr: A workflow engine for advanced data flows in medical image analysis. Frontiers in ICT, 3, 15.
- Riba-Llena, I., Koek, M., Verhaaren, B. F. J., Vrooman, H. A., van der Lugt, A., Hofman, A., … Vernooij, M. W. (2015). Small cortical infarcts: prevalence, determinants, and cognitive correlates in the general population. International Journal of Stroke, 10, 18–24.
- Levolger, S., van Vledder, M. G., Muslem, R., Koek, M., Niessen, W. J., de Man, R. A., … Ijzermans, J. N. M. (2015). Sarcopenia impairs survival in patients with potentially curable hepatocellular carcinoma. Journal of Surgical Oncology, 112(2), 208–213.
- Massl, R., van Blankenstein, M., Jeurnink, S., Hermans, J. J., de Haan, M. C., Stoker, J., … others. (2014). Visceral adipose tissue: the link with esophageal adenocarcinoma. Scandinavian Journal of Gastroenterology, 49(4), 449–457.
- Lafranca, J. A., Prens, L. M., van Bruggen, M., Moelker, A., Koek, M., Niessen, W. J., … Dor, F. J. M. F. (2014). Perirenal and Intra-Abdominal Fat Mass Superior over BMI in Predicting Donor Outcome in Laparoscopic Donor Nephrectomy. SHIFTING PARADIGMS IN LIVE KIDNEY DONATION AND TRANSPLANTATION, 107.
- Bakker, R., Koek, M., Ranguelova, E., De Boer, P. T., Meulenbroek, O., Burgmans, S., … others. (2014). eScience Infrastructure for running validated image analysis pipelines: how to best compare MRI scans from different medical centers.
- Gonçalves, F. B., Koek, M., Verhagen, H. J. M., Niessen, W. J., & Poldermans, D. (2011). Body-mass index, abdominal adiposity, and cardiovascular risk. The Lancet, 378(9787), 227.
- Massl, R., Jeurnink, S., Hermans, J. J., de Haan, M. C., Stoker, J., Koek, M., … Kuipers, E. J. (2011). No Significant Differences in Abdominal Fat Distribution Between Patients With Esophageal Adenocarcinoma, Esophageal Squamous Cell Carcinoma and Healthy Population Controls. Gastroenterology, 140(5), S–672.
- Mook-Kanamori, D. O., Holzhauer, S., Hollestein, L. M., Durmus, B., Manniesing, R., Koek, M., … others. (2009). Abdominal fat in children measured by ultrasound and computed tomography. Ultrasound in Medicine & Biology, 35(12), 1938–1946.
Conference Articles
- Klein, S., Vast, E., Van Soest, J., Dekker, A., Koek, M., & Niessen, W. (2015). XNAT imaging platform for BioMedBridges and CTMM TraIT. In Journal of clinical bioinformatics (Vol. 5, p. S18). BioMed Central.
- Koek, M., Achterberg, H., de Groot, M., Vast, E., Klein, S., & Niessen, W. (2015). Population Imaging Study IT Infrastructure: An Automated Continuous Workflow Approach. In 1 st MICCAI Workshop on (p. 31).
- Achterberg, H., Koek, M., & Niessen, W. (2015). Fastr: a workflow engine for advanced data flows. In 1st MICCAI Workshop on Management and Processing of Images for Population Imaging (Munich) (pp. 39–46).
- De Boer, P., Ranguelova, E., Ivanova, M., Koek, M., Van Der Lijn, F., Niessen, W., … others. (2013). eScience Infrastructure for sharing neuroimaging data and running validated analysis pipelines on a high performance cloud. In Front. Neuroinform. Conference Abstract: Neuroinformatics.
- Niessen, W., Vrooman, H., de Boer, R., van der Lijn, F., Achterberg, H., Koek, M., … others. (2012). Quantitative imaging biomarkers in neurologic disease: Population study perspective. In 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI) (pp. 911–911). IEEE.
- Koek, M., Goncalves, F. B., Poldermans, D., Niessen, W., & Manniesing, R. (2011). Semi–automated subcutaneous and visceral adipose tissue quantification in computed tomography. In International MICCAI Workshop on Computational and Clinical Challenges in Abdominal Imaging (pp. 215–222). Springer, Berlin, Heidelberg.
- Vrooman, H. A., Jasperse, M. M. S., Koek, M., van der Lijn, F., Achterberg, H. C., de Bruijne, M., … Niessen, W. J. (2011). A computer-aided diagnosis system for the early and differential diagnosis of neurodegenerative disease. In European Congress of Radiology.
- Goncalves, F. B., Koek, M., Ravensbergen, N., Voute, M., Verhagen, H., Niessen, W., & Poldermans, D. (2011). Automated visceral and subcutaneous abdominal fat volume measurement: a validation study. In AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (Vol. 183, pp. 703–703). AMER THORACIC SOC 61 BROADWAY, FL 4, NEW YORK, NY 10006 USA.
- Van Kuijk, J. P., Manniesing, R., Goei, D., Van Gestel, Y. R. B. M., Hoeks, S. E., Koek, M., … Poldermans, D. (2010). Automatic quantification of the abdominal visceral fat content: a true marker of the metabolic syndrome? In EUROPEAN HEART JOURNAL (Vol. 31, pp. 1009–1009). OXFORD UNIV PRESS GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND.